EGAF00005319296 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319296
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3719750
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19399	0.5215135425767861	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10169	0.2733785872706499	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5319	0.1429934807446737	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4985	0.13401438268700855	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4476	0.12033066738356073	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4062	0.10920088715639492	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5635	37.9565	32
TCGCCGG	5560	36.789013	48
GCGGCAC	5880	36.451256	33
CCCGTCG	5615	36.34902	44
CCGTCGC	5810	34.90411	45
ACCCGCG	6115	34.903946	25
CGGCACC	6155	34.78	34
CCCCCGA	6495	32.996437	19
CCGCGCG	6700	32.144974	27
CCCCGAC	6685	32.021336	20
GCACCCC	6815	31.806988	36
CACCCCC	6835	31.632494	37
CCCGCGC	6940	30.818224	26
CGTCGCC	6680	30.480633	46
GGCACCC	7220	29.955534	35
AGTCCGC	7655	28.81536	7
GTCGCCG	7180	28.519161	47
CAGTCCG	7450	28.361116	6
GCGCGGG	7300	28.086975	62
TAGTCCG	345	27.928665	6