EGAF00005319298 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319298
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3720300
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	19291	0.5185334516033653	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	10007	0.26898368411149637	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5670	0.15240706394645595	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4938	0.1327312313523103	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4544	0.12214068757895868	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	3977	0.10689998118431308	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5290	39.38844	32
GCGGCAC	5510	37.891533	33
CCCGTCG	5280	36.60288	44
TCGCCGG	5350	36.002563	48
CGGCACC	5800	35.89442	34
ACCCGCG	5885	35.344154	25
CCGTCGC	5515	34.9914	45
CCCCCGA	5960	34.93173	19
CCCCGAC	6180	33.80796	20
CCGCGCG	6310	32.988586	27
GCACCCC	6445	32.54671	36
CACCCCC	6645	31.52943	37
CCCGCGC	6710	31.011562	26
GGCACCC	6985	30.118546	35
CGTCGCC	6590	29.408983	46
AGTCCGC	7245	28.84615	7
CAGTCCG	7095	28.339878	6
ACCCCCC	7495	27.92482	38
TAGTCCG	310	27.766163	6
GCGCGGG	7040	27.707111	62