FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005319300

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005319300
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3714184
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG190280.5123063370043057No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN98500.2651995700805345No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG56150.15117721685301536No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG51710.13922304333872526No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA45130.12150717358106115No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG40460.10893375233967946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)