EGAF00005319320 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319320
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3497019
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13578	0.38827355527665136	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6599	0.18870357867658138	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	6467	0.18492893518736958	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	5913	0.16908687084628365	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5305	0.15170063416870197	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3998	0.1143259444687032	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3675	0.10508950623373794	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3658	0.10460337790558186	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3547	0.10142924588056285	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1825	0.0	43.060394	70
CGCGGCA	4525	0.0	33.930016	32
GCGGCAC	4645	0.0	32.98737	33
TCGCCGG	4555	0.0	32.198044	48
CGGCACC	4780	0.0	31.99008	34
CCGTCGC	4580	0.0	31.82839	45
CCCGTCG	4650	0.0	31.48347	44
AGGACCG	665	0.0	31.258736	70
ATGGCCG	2010	0.0	31.068844	69
GTTCCGT	350	0.0	30.64575	1
GCACCCC	5375	0.0	28.722975	36
GACGTAT	525	0.0	28.481485	44
CACCCCC	5530	0.0	27.92753	37
CCCCCGA	5570	0.0	27.806011	19
CGCGAAT	50	0.007673392	27.64676	3
ACCCGCG	5705	0.0	27.113817	25
TTATCGG	205	0.0	26.97245	7
TCGGATA	545	0.0	26.721289	34
CGCCCTA	1125	0.0	26.584038	61
GTGCCGT	560	0.0	26.567888	1