EGAF00005319322 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319322
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3585477
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	14050	0.3918586006826986	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6722	0.1874785419066975	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	6552	0.18273719228989616	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6058	0.16895938810930874	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5114	0.1426309525901296	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4051	0.11298357233918946	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3773	0.10523007120112611	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3662	0.10213424880427346	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3643	0.10160433325886624	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1930	0.0	41.97598	70
CGCGGCA	4470	0.0	34.0117	32
GCGGCAC	4570	0.0	33.20004	33
CGGCACC	4705	0.0	32.107822	34
TCGCCGG	4570	0.0	31.951675	48
CCCGTCG	4570	0.0	31.886581	44
CCGTCGC	4550	0.0	31.813974	45
ATGGCCG	2055	0.0	31.149988	69
CGAATTA	100	1.4348188E-8	31.087452	5
GTTATCG	200	0.0	29.359142	6
GTTCCGT	390	0.0	29.273272	1
CCCCCGA	5235	0.0	29.240255	19
TCGCCGT	355	0.0	28.261261	1
GCACCCC	5460	0.0	28.066042	36
ACCCGCG	5495	0.0	27.948093	25
CACCCCC	5450	0.0	27.678055	37
GGCACCC	5625	0.0	27.23438	35
TATCGGA	195	0.0	26.56936	8
AGCGAAC	430	0.0	26.090437	68
CCCCGAC	5845	0.0	26.015308	20