EGAF00005319324 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319324
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3545701
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13871	0.3912061394911754	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6646	0.1874382526896656	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	6415	0.18092332094556196	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	5897	0.16631408006484472	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5143	0.14504889160140688	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3956	0.11157173151374017	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3673	0.10359023504802013	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3667	0.10342101604167978	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3644	0.10277234318404176	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1755	0.0	45.916313	70
TACGCGA	35	0.0013381304	39.488735	2
CGCGGCA	4195	0.0	32.872215	32
GTCCGTT	370	0.0	31.75108	2
GCGGCAC	4420	0.0	31.284327	33
ATGGCCG	2040	0.0	30.800077	69
TCGCCGG	4235	0.0	30.60912	48
CCCGTCG	4305	0.0	30.53841	44
CGGCACC	4520	0.0	30.520706	34
CCGTCGC	4265	0.0	30.430052	45
GTGCCGT	575	0.0	28.898994	1
CGTACGT	145	2.1827873E-11	28.605785	19
GTTCCGT	475	0.0	28.423681	1
GCACCCC	4890	0.0	28.36759	36
GACGTAT	455	0.0	28.282524	44
CGGATAG	445	0.0	28.048872	35
AGGACCG	740	0.0	27.39525	70
CCCCCGA	5115	0.0	27.16571	19
TCGGATA	460	0.0	27.126554	34
CACCCCC	5265	0.0	26.55524	37