EGAF00005319326 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319326
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3423863
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	12943	0.3780233029183703	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7186	0.2098798929746897	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6055	0.17684702921816675	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5790	0.1691072335546136	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4825	0.14092269462884466	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4328	0.12640692691267144	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4062	0.11863792447302944	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1390	37.072506	70
CGCGGCA	4000	35.73785	32
CGGCACC	4165	34.165455	34
GCGGCAC	4170	34.118496	33
TCGCCGG	3905	33.529793	48
CCCGTCG	4000	33.039463	44
CCGTCGC	3985	32.73947	45
GTTCCGT	410	31.375704	1
CCCCCGA	4580	31.012012	19
ACCCGCG	4650	30.63623	25
GCACCCC	4695	30.394142	36
CGCCCTA	1120	29.09789	61
CACCCCC	4895	29.088184	37
ATGGCCG	1360	28.790064	69
GGCACCC	5055	28.634558	35
GTCCGTT	235	28.01758	2
GACGTAT	300	27.822706	44
CGTACGT	175	27.71415	19
CGTGCGA	505	27.525026	40
CCCCGAC	5145	27.408426	20