EGAF00005319328 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319328
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3408940
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	12710	0.3728431711910447	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7007	0.20554776558108973	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5928	0.17389569778288852	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5726	0.16797010214318822	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4950	0.1452064278045375	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4108	0.12050666776182625	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4014	0.11774921236513403	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3489	0.10234853062828914	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	3925	0.0	34.914368	32
GCGGCAC	4035	0.0	33.969547	33
TGGCCGT	1605	0.0	33.76391	70
TCGCCGG	3930	0.0	32.25332	48
CGGCACC	4270	0.0	31.860449	34
CCCGTCG	4040	0.0	31.426542	44
CCGTCGC	4045	0.0	31.137062	45
GTTCCGT	355	0.0	29.510612	1
CCCCCGA	4665	0.0	29.397167	19
ACCCGCG	4740	0.0	28.733088	25
GCACCCC	4820	0.0	28.236135	36
AACGACG	50	0.007452387	27.812794	42
CACCCCC	5045	0.0	27.327372	37
ATGGCCG	1525	0.0	27.271935	69
CCCCGAC	5040	0.0	27.213074	20
GATAGGC	2255	0.0	27.118849	40
GGCACCC	5130	0.0	26.65737	35
ATAGCGC	615	0.0	25.528807	70
GTCCGTT	260	0.0	25.30189	2
GTGCCGT	605	0.0	24.819807	1