EGAF00005319330 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319330
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3418289
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	12941	0.37858121416884294	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7306	0.2137326598189913	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6139	0.17959277287555264	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5753	0.16830057376658322	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4874	0.1425859545521166	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4236	0.12392164618029664	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3997	0.11692984414132332	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3534	0.10338505609092737	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	3835	37.374866	32
CCGTCGC	3770	35.53389	45
GCGGCAC	4040	35.3961	33
CGGCACC	4030	35.316856	34
TCGCCGG	3770	35.19989	48
TGGCCGT	1430	35.175205	70
CCCGTCG	3830	34.876125	44
CCCCCGA	4345	33.172127	19
ACCCGCG	4520	31.825129	25
GCACCCC	4580	31.465797	36
GTGCCGT	510	30.68074	1
CACCCCC	4770	30.072575	37
CCCCGAC	4875	29.780241	20
CGGATAG	365	29.490377	35
CGTATCA	355	29.412453	46
GACGTAT	355	29.396027	44
GGCACCC	4920	29.288322	35
ATGGCCG	1335	29.002087	69
CCGATCG	1670	28.614079	70
ACGTATC	370	28.21259	45