EGAF00005319342 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319342
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3491056
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13630	0.39042627789413864	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5985	0.17143809781338368	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5340	0.15296231283600148	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5010	0.14350958563827107	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4412	0.12638009817086865	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3868	0.1107974206085494	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3721	0.10658666031137856	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3674	0.10524036280139877	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1440	42.04875	70
CGCGGCA	4375	35.43239	32
GCGGCAC	4520	34.22441	33
CGGCACC	4590	33.632217	34
CCCGTCG	4320	33.084282	44
TCGCCGG	4245	32.900772	48
CCGTCGC	4375	32.280697	45
ATGGCCG	1550	31.594048	69
CCCCCGA	5135	30.476488	19
GCACCCC	5165	30.100803	36
CACCCCC	5265	29.733662	37
ACCCGCG	5180	29.694036	25
AGGACCG	630	28.032501	70
CCCCGAC	5565	27.938969	20
GGCACCC	5740	27.08042	35
GACGTAT	340	26.59243	44
AGTCCGC	5850	26.505726	7
CAGTCCG	5690	26.277802	6
GTGCCGT	530	25.561708	1
TCCGCCC	6340	25.439829	9