EGAF00005319344 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319344
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3465879
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13547	0.39086765579525423	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5828	0.16815359105150526	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5222	0.15066884908561437	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5036	0.14530224511588546	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4354	0.12562469722687952	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3869	0.11163113311226387	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3777	0.10897668383691411	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3681	0.10620682372350565	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1460	0.0	39.334442	70
CGCGGCA	4315	0.0	35.283295	32
GCGGCAC	4550	0.0	33.393925	33
CCCGTCG	4295	0.0	33.365402	44
GTCCGTT	250	0.0	33.226013	2
TCGCCGG	4355	0.0	32.87496	48
CCGTCGC	4395	0.0	32.77545	45
GTTCCGT	310	0.0	32.66033	1
CGGCACC	4675	0.0	32.65559	34
CCCCCGA	5210	0.0	29.368332	19
GCACCCC	5285	0.0	29.098557	36
CACCCCC	5320	0.0	29.045614	37
ACCCGCG	5240	0.0	28.948475	25
ATGGCCG	1565	0.0	28.719	69
GGCACCC	5575	0.0	27.328321	35
CGCCCTA	1030	0.0	26.572655	61
CCCCGAC	5800	0.0	26.323458	20
GTTATCG	175	9.094947E-12	25.70949	6
AGTCCGC	6050	0.0	25.513361	7
CGCTTCC	755	0.0	25.433144	1