EGAF00005319346 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319346
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3479055
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13626	0.3916580795647094	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5941	0.1707647622702142	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5424	0.1559044050755162	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4887	0.14046917913053975	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4309	0.12385547224749249	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3978	0.1143413944303841	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3955	0.1136802953675639	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3721	0.10695433098930601	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1510	43.22566	70
CGCGGCA	4160	34.769627	32
GCGGCAC	4390	33.036514	33
CCCGTCG	4205	32.595657	44
CCGTCGC	4165	32.578365	45
TCGCCGG	4170	32.407097	48
ATGGCCG	1600	32.31912	69
CGGCACC	4550	31.726852	34
GTTCCGT	390	31.1772	1
CCCCCGA	5025	29.074663	19
ACCCGCG	5065	28.998856	25
GCACCCC	5105	28.625736	36
TCGCCGT	380	28.340778	1
CACCCCC	5230	27.81444	37
CGTACGT	180	26.927364	19
CCCCGAC	5580	26.308432	20
GGCACCC	5660	25.754128	35
GTCCGTT	270	25.64105	2
AGTCCGC	5725	25.573536	7
CAGTCCG	5500	25.48697	6