EGAF00005319348 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319348
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3482284
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13761	0.39517167468247855	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5832	0.16747628855084767	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5499	0.15791359923544432	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4895	0.140568661257956	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4316	0.12394164289874117	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3899	0.11196674366593878	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3856	0.11073192192250833	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3663	0.10518958246943672	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1625	42.407177	70
CGCGGCA	4105	37.41267	32
CCGTCGC	4100	35.727196	45
CCCGTCG	4130	35.54165	44
GCGGCAC	4320	35.47811	33
TCGCCGG	4115	35.466812	48
CGGCACC	4410	34.9955	34
CCCCCGA	4810	32.08297	19
ACCCGCG	4805	31.91913	25
CACCCCC	4915	31.213776	37
GCACCCC	4960	31.13334	36
ATGGCCG	1755	30.65081	69
GACGTAT	245	29.81456	44
CCCCGAC	5275	29.388521	20
GGCACCC	5445	28.347956	35
TCGCCGT	335	28.128462	1
AGTCCGC	5720	27.152138	7
CAGTCCG	5615	26.674225	6
GTTCCGT	410	26.387903	1
GTCCGCC	5910	26.337755	8