EGAF00005319354 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319354
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3533454
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	12842	0.3634404183555241	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7743	0.219134025800251	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	6278	0.17767317757638842	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6199	0.17543740487353168	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4019	0.11374139864280108	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3760	0.10641146028786563	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	3645	0.10315685445459316	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3631	0.1027606415705426	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2490	52.905743	70
ATGGCCG	2820	37.400467	69
CGCGGCA	3750	36.95892	32
GCGGCAC	3955	34.96926	33
TCGCCGG	3980	33.197765	48
CGGCACC	4215	33.151173	34
CCCGTCG	4065	32.496593	44
CCGTCGC	4065	32.428238	45
AGGACCG	770	31.953585	70
TAGTCCG	335	30.828806	6
GTCGGTT	250	30.294441	4
CCCCCGA	4540	29.82159	19
GCACCCC	4745	29.543898	36
TATGGCC	3365	28.897413	68
GTGCCGT	565	28.749947	1
GATAGGC	2555	28.641855	40
GTTCGTA	170	28.351215	3
GTATGGC	3385	27.916437	67
GTTATCG	210	27.868261	6
CACCCCC	5080	27.809942	37