EGAF00005319360 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319360
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3424203
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	14620	0.42696066792769	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6574	0.19198628118718428	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5648	0.1649434919600269	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4856	0.14181402212427244	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4798	0.14012019731306818	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3938	0.115004863905557	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3784	0.11050746699304918	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3733	0.10901806931423166	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1505	0.0	38.72395	70
GCGGCAC	4580	0.0	33.92566	33
TCGCCGG	4295	0.0	33.923325	48
CGCGGCA	4600	0.0	33.69634	32
CCGTCGC	4370	0.0	33.377617	45
CCCGTCG	4430	0.0	33.0652	44
CGGCACC	4710	0.0	32.92337	34
ATGGCCG	1450	0.0	30.819916	69
AGGACCG	530	0.0	30.334183	70
GCACCCC	5170	0.0	30.20949	36
ACCCGCG	5310	0.0	29.276365	25
CACCCCC	5420	0.0	28.693882	37
CCCCCGA	5565	0.0	28.219929	19
TCGCCGT	270	0.0	28.197351	1
GGCACCC	5580	0.0	27.981178	35
CGTTGCG	130	6.1136234E-9	26.619875	1
GTACGGG	965	0.0	26.155943	5
AGTCCGC	6105	0.0	26.051975	7
CCCCGAC	6115	0.0	25.912945	20
CAGTCCG	6010	0.0	25.831326	6