EGAF00005319364 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005319364
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3480262
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	14009	0.4025271660581876	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6396	0.1837792671931021	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5995	0.172257146157387	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4809	0.13817925202183054	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4789	0.13760458264349065	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3823	0.10984805166967314	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3811	0.1095032500426692	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3697	0.10622763458613173	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1610	0.0	40.18634	70
CGCGGCA	4470	0.0	35.213108	32
GCGGCAC	4605	0.0	34.336823	33
CGGCACC	4750	0.0	33.15124	34
CCCGTCG	4430	0.0	32.753845	44
TCGCCGG	4390	0.0	32.712288	48
TCGCCGT	300	0.0	32.34065	1
CCGTCGC	4550	0.0	31.749462	45
GTTCCGT	275	0.0	31.500633	1
ATGGCCG	1665	0.0	30.768332	69
GCACCCC	5240	0.0	30.392698	36
CCCCCGA	5345	0.0	30.036606	19
CACCCCC	5295	0.0	29.824362	37
ACCCGCG	5425	0.0	29.10269	25
CGCGTTT	60	5.346942E-4	28.820778	3
GGCACCC	5615	0.0	28.174282	35
CGCCCTA	1270	0.0	27.952253	61
CGACCGT	270	0.0	26.912548	20
CCCCGAC	6045	0.0	26.502325	20
AGGACCG	495	0.0	26.344065	70