FastQCFastQC Report
Wed 8 May 2024
EGAF00005319366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005319366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3440016
Total Bases257.5 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG143640.4175561974130353No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN66790.19415607369268048No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG50210.14595862344826302No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT40280.11709247863963423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)