FastQCFastQC Report
Wed 8 May 2024
EGAF00005319371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005319371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3431463
Total Bases256.9 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT152870.44549511389165497No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN66060.19251263965253304No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG60080.1750856704560125No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA39520.11516953555961408No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT35530.10354184206561458No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)