FastQCFastQC Report
Wed 8 May 2024
EGAF00005319372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005319372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3428001
Total Bases256.7 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG143950.41992403152741203No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN65650.1915110293141688No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG49330.14390310854635108No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGT41490.12103263680494841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)