FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005321193

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005321193
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13739033
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATCGCG3700.001672075210.2700729
CGCTAGT5951.5383275E-59.5819141
CGACCTA9902.1467713E-88.6358834
CCGGTAT35400.08.58943751
GCCGTAT14450.08.5485711
TGCGCGA16900.08.431799
CGGGGTT45500.08.3534641
CCGGGAT45550.08.3442951
CCGACAT37700.08.3174571
CTCGGAT38850.08.3158361
CCCGTAT17400.08.1914351
CGGGAAT31400.08.1705661
ATCGAAG40150.08.1629816
GCATTCG23400.08.1194433
CGCGAAA6505.2386895E-108.04124842-43
CGGGCAT44500.08.0073581
CCCGGAT52750.07.8358261
CCGAGAT56000.07.80526731
CGGTATT32600.07.72218752
CGCGGAT13551.2187229E-97.7138531
Produced by FastQC (version 0.11.5)