FastQCFastQC Report
Thu 16 Jun 2022
EGAF00005321479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005321479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464638279
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAAGTCATGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT30106090.647946830054439No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTCGCGCATCTCGTATG29971260.6450450028461818TruSeq Adapter, Index 8 (97% over 35bp)
TAAAGTCATGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA20168690.43407293181713946No Hit
TAAAGTCATGCGTACGCTGGACTTTGTAGGATACCCTCGCTTTCCTGCTC5681670.122281573791728No Hit
TAAAGTCATGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC4997610.10755915355824568No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)