FastQCFastQC Report
Tue 5 Jul 2022
EGAF00005321484

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005321484
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471167719
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCATCAGCGCGGCGTCCATCTCGAAGGAGTCGCCAGCGATAACCGGAGT28344850.6015872662108246No Hit
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATCTC25539040.5420371339149405Illumina Single End PCR Primer 1 (96% over 31bp)
TGCATCAGCGCTGAATTGTTCGCGTTTACCTTGCGTGTACGCGCAGGAAA18528180.3932395886399849No Hit
TGCATCAGCGCGTACGCTGGACTTTGTGGGATACCCTCGCTTTCCTGCTC10190740.21628688870342577No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)