FastQCFastQC Report
Wed 8 May 2024
EGAF00005322340

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322340
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3363168
Total Bases450.3 Mbp
Sequences flagged as poor quality0
Sequence length19-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTAACACTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAA259020.770166699968601No Hit
AATTAACACTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACT49590.1474502611823138No Hit
AATTAACACTGCGTGCTGGGAGAACCACTGCTCTCTTCAAAGCTGTCAGA47450.14108721300868704No Hit
AATTAACACTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATT35400.10525789969457369No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)