FastQCFastQC Report
Fri 10 May 2024
EGAF00005322376

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322376
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10991147
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length9-126
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT402780.3664585688827563No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN304800.27731409651786115No Hit
CTGCGTGCTGGGAGAACCACTGCTCTCTTCAAAGCTGTCAGACAGGGACA126170.11479238700019206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)