FastQCFastQC Report
Wed 15 May 2024
EGAF00005322387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53585863
Total Bases6.2 Gbp
Sequences flagged as poor quality0
Sequence length4-121
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT3740250.6979919311927476No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA849540.15853808307612774No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAA623380.11633292161404585No Hit
CTGCGTGCTGGGAGAACCACTGCTCTCTTCAAAGCTGTCAGACAGGGACA593360.11073069775884732No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)