FastQCFastQC Report
Thu 9 May 2024
EGAF00005322391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4697440
Total Bases570.7 Mbp
Sequences flagged as poor quality0
Sequence length18-137
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT240460.5118958411390034No Hit
CAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAACAGTC73680.15685139139616472No Hit
CTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCTCCAAG64360.13701079737048263No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA58540.1246210701999387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)