FastQCFastQC Report
Thu 16 May 2024
EGAF00005322402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41135988
Total Bases4.8 Gbp
Sequences flagged as poor quality0
Sequence length9-126
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT1692090.41134055173294976No Hit
CAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAACAGTC485730.11807908928794904No Hit
CTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCTCCAAG464720.11297163933439498No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)