FastQCFastQC Report
Sun 5 May 2024
EGAF00005322405

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322405
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16490536
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length8-121
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT715320.4337760761687795No Hit
CAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAACAGTC211900.1284979457308119No Hit
CTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCTCCAAG168230.1020160897135181No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA167440.10153702705600351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)