FastQCFastQC Report
Thu 9 May 2024
EGAF00005322413

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322413
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4615855
Total Bases583 Mbp
Sequences flagged as poor quality0
Sequence length20-137
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT277270.6006904462986814No Hit
CTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCTCCAAG65320.14151224421044423No Hit
CAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAACAGTC63740.13808925973627853No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA53150.11514659797588961No Hit
CTGCATCAAAAGAAAGGTTCAACTCTGTTAGTTGAGGACACACATCACAA50450.10929719412763182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)