FastQCFastQC Report
Wed 8 May 2024
EGAF00005322425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10203389
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length12-121
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT452190.4431762819196642No Hit
CTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCTCCAAG141690.13886562592095628No Hit
CTGCTGTCTACTTTCTATTTGTAATCCCGTTTCCAACGAAATCCTCAGAA139510.1367290808965531No Hit
CAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAACAGTC126740.12421363137287032No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA113000.11074751731998064No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)