FastQCFastQC Report
Fri 3 May 2024
EGAF00005322449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16574228
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length6-121
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT788590.4757928996753273No Hit
CTGCGTGCTGGGAGAACCACTGCTCTCTTCAAAGCTGTCAGACAGGGACA198640.1198487193491003No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA179520.10831273710003265No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)