FastQCFastQC Report
Sun 5 May 2024
EGAF00005322464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15900251
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length20-126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT546910.3439631236010048No Hit
CAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAACAGTC302050.18996555463181053No Hit
CTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCTCCAAG196270.12343830295509171No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)