Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005322504 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5199845 |
Sequences flagged as poor quality | 0 |
Sequence length | 6-151 |
%GC | 50 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCAGCCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCC | 28161 | 0.541573835373939 | No Hit |
TCAGCCTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCT | 8425 | 0.1620240603325676 | No Hit |
TCAGCCAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAA | 7769 | 0.14940829967047095 | No Hit |
TCAGCCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATT | 6911 | 0.13290780782888723 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGACGC | 430 | 0.0 | 130.61586 | 145 |
TCAGCCA | 261010 | 0.0 | 123.5321 | 1 |
AGCCTGC | 265750 | 0.0 | 123.20375 | 3 |
AGCCAGC | 265285 | 0.0 | 122.41216 | 3 |
TCAGCCT | 266890 | 0.0 | 121.92202 | 1 |
CAGCCAG | 274400 | 0.0 | 118.3994 | 2 |
GCCTGCA | 98890 | 0.0 | 116.23845 | 4 |
CAGCCTG | 282560 | 0.0 | 115.901276 | 2 |
GCCTGCT | 92575 | 0.0 | 115.65094 | 4 |
GCCAGCT | 82365 | 0.0 | 114.9701 | 4 |
GCCAGCA | 95810 | 0.0 | 114.21609 | 4 |
GCCAGCC | 91295 | 0.0 | 111.17262 | 4 |
GCATAGT | 10120 | 0.0 | 107.23753 | 8 |
GCCTGCC | 80765 | 0.0 | 106.229836 | 4 |
CCTGCTA | 21895 | 0.0 | 105.52391 | 5 |
CATAGTA | 9765 | 0.0 | 104.41447 | 9 |
CTGCATA | 13875 | 0.0 | 103.99469 | 6 |
GCCTGCG | 20675 | 0.0 | 103.82142 | 4 |
CTGCTGC | 5750 | 0.0 | 103.50597 | 6 |
GCCAGCG | 20835 | 0.0 | 102.7792 | 4 |