FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005322511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3890848
Sequences flagged as poor quality0
Sequence length20-137
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT196830.5058794381070656No Hit
CAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAACAGTC63230.16250956089777857No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA52930.13603718263987696No Hit
CTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCTCCAAG44620.1146793706667544No Hit
CTGCATCAAAAGAAAGGTTCAACTCTGTTAGTTGAGGACACACATCACAA40910.10514417422628691No Hit
CTGCTGTCTACTTTCTATTTGTAATCCCGTTTCCAACGAAATCCTCAGAA39430.10134037618534572No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAA39240.10085205076117082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)