FastQCFastQC Report
Wed 8 May 2024
EGAF00005322527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11559241
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length20-121
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT379130.32798866292345663No Hit
CTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCTCCAAG159710.13816651110570322No Hit
CAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAACAGTC152390.13183391539288783No Hit
CTGCATCAAAAGAAAGGTTCAACTCTGTTAGTTGAGGACACACATCACAA148820.1287454773198344No Hit
CAGCTTTGAAACTCTATTTTTGTGGATTCTGCAAATGGATATTTAGATTG118520.10253268359055755No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)