FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005322536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9581423
Sequences flagged as poor quality0
Sequence length6-126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT562330.5868961217973572No Hit
CAGCCATTCAAGCAATCCTATACAACCGTATCGGCGATATCGGTTTCATC231830.24195779687422214No Hit
CTGCTGCTAGGAGGAGGCCTAGTAGTGGGGTGAGGCTTGGATTAGCGTTT113660.11862538581168998No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA104040.1085851235249712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)