FastQCFastQC Report
Fri 1 Jul 2022
EGAF00005322582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29631769
Sequences flagged as poor quality0
Sequence length20-126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT1013850.34214967051072787No Hit
CTGCATCAAAAGAAAGGTTCAACTCTGTTAGTTGAGGACACACATCACAA842190.2842186033510183No Hit
CAGCTTTGAAACTCTATTTTTGTGGATTCTGCAAATTGATATTTAGATTG563120.19003927845144852No Hit
CAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAACAGTC414210.1397857819423471No Hit
CTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCTCCAAG365650.12339796520416989No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)