FastQCFastQC Report
Sat 4 Jun 2022
EGAF00005322584

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322584
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48410070
Sequences flagged as poor quality0
Sequence length6-126
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT3985400.8232584666785238No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA939450.19406086378309306No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAA712250.14712847967375384No Hit
CTGCGTGCTGGGAGAACCACTGCTCTCTTCAAAGCTGTCAGACAGGGACA502830.10386888513071763No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)