FastQCFastQC Report
Mon 6 May 2024
EGAF00005322588

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322588
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14886622
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length16-126
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN577890.3881941786390492No Hit
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT520920.34992491916567775No Hit
CAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAACAGTC286130.19220612977208665No Hit
CTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCTCCAAG181720.12206933177990278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)