FastQCFastQC Report
Fri 10 May 2024
EGAF00005322594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16275060
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length6-126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT706070.4338355741852872No Hit
CAGCTAACAGAGTTGAACCTTTCTATTGACAGAGCAGTTTTGAAACAGTC192140.11805793649915883No Hit
CTGCTGTCTACTTTTTATACGTAATCCCGTTTCCAACGAAATCCTCCAAG183970.11303798572785599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)