FastQCFastQC Report
Wed 8 May 2024
EGAF00005322625

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322625
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4424675
Total Bases565.1 Mbp
Sequences flagged as poor quality0
Sequence length19-137
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT291110.6579240283184641No Hit
CTGCGTGCTGGGAGAACCACTGCTCTCTTCAAAGCTGTCAGACAGGGACA72430.16369563866272663No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA63280.14301615372880494No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAA45660.10319401989976665No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)