FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005322649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16585805
Sequences flagged as poor quality0
Sequence length6-121
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT1244530.7503585144043355No Hit
CTGCTGCTAGGAGGAGGCCTAGTAGTGGGGTGAGGCTTGGATTAGCGTTT361780.21812628328863143No Hit
CAGCCATTCAAGCAATCCTATACAACCGTATCGGCGATATCGGTTTCATC337090.20324005979812254No Hit
CTGCGTGCTGGGAGAACCACTGCTCTCTTCAAAGCTGTCAGACAGGGACA265850.1602876676772698No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA197290.11895111512525318No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)