FastQCFastQC Report
Mon 6 May 2024
EGAF00005322654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16478582
Total Bases1.9 Gbp
Sequences flagged as poor quality0
Sequence length12-126
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT959570.5823134539124786No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN646470.392309241171358No Hit
CAGCCATTCAAGCAATCCTATACAACCGTATCGGCGATATCGGTTTCATC453300.27508434888390276No Hit
CTGCTGCTAGGAGGAGGCCTAGTAGTGGGGTGAGGCTTGGATTAGCGTTT277410.16834579577296155No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA269080.1632907491676165No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCATTATTCACAA193070.1171642074542579No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)