FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005322663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2935243
Sequences flagged as poor quality0
Sequence length12-137
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCT161160.5490516458092226No Hit
CAGCCATTCAAGCAATCCTATACAACCGTATCGGCGATATCGGTTTCATC43050.14666588081463783No Hit
CTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCACTATTCACAA36130.12309031994966005No Hit
CTGCTGCTAGGAGGAGGCCTAGTAGTGGGGTGAGGCTTGGATTAGCGTTT30900.10527237438263204No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)