FastQCFastQC Report
Wed 8 May 2024
EGAF00005322664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005322664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2935243
Total Bases391.7 Mbp
Sequences flagged as poor quality0
Sequence length12-151
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCAAGGTCCTGCATAGTATTCCATGGTGTATATGTGCCACATTTTCTTA188670.6427747208663814No Hit
ATCAAGGTCCAGCCATTCAAGCAATCCTATACAACCGTATCGGCGATATC44880.15290045832661894No Hit
ATCAAGGTCCTGCTATAAAGACACATGCACACGTATGTTTATTGCGGCAC41800.14240728961792942No Hit
ATCAAGGTCCTGCGTGCTGGGAGAACCACTGCTCTCTTCAAAGCTGTCAG32320.11011013398209278No Hit
ATCAAGGTCCAGCACTATTCACAATAGCAAAGACTTGGAACCAACCCAAA31920.1087473847991461No Hit
ATCAAGGTCCTGCTGCTAGGAGGAGGCCTAGTAGTGGGGTGAGGCTTGGA31290.10660105483600506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)