Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005326331 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 11593756 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 52 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG | 12374 | 0.10672986390260412 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTACTCG | 3775 | 0.0 | 22.273418 | 2 |
AAAGTGC | 17880 | 0.0 | 20.635317 | 4 |
CGAGTAG | 3600 | 0.0 | 20.134878 | 3 |
CCAAAGT | 20650 | 0.0 | 19.586643 | 2 |
AGTAGCT | 10960 | 0.0 | 19.048203 | 5 |
TACTCGG | 4575 | 0.0 | 19.012604 | 3 |
CGCGATA | 995 | 0.0 | 18.94422 | 145 |
CAAAGTG | 21565 | 0.0 | 18.184414 | 3 |
TAGCTGG | 13040 | 0.0 | 18.17878 | 7 |
GCTACTC | 8740 | 0.0 | 18.16842 | 1 |
AAGTGCT | 20590 | 0.0 | 18.13105 | 5 |
CCGAGTA | 4230 | 0.0 | 17.821278 | 2 |
GAGTAGC | 8095 | 0.0 | 17.192745 | 4 |
CCCAAAG | 27170 | 0.0 | 17.026114 | 1 |
GCTGGGA | 38600 | 0.0 | 16.58376 | 9 |
GTCTCGC | 6065 | 0.0 | 16.25678 | 145 |
GCTACTT | 7600 | 0.0 | 15.837222 | 1 |
CTACTTG | 7255 | 0.0 | 15.386122 | 2 |
GCTAATT | 8290 | 0.0 | 14.781437 | 1 |
GTAGCTG | 14730 | 0.0 | 14.56726 | 6 |