FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences898169
Sequences flagged as poor quality0
Sequence length49-150
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACGAATA1150.003394940932.658813135-139
GGCGCCG950.00583825629.2347140-144
CGGGGGG3907.6361175E-915.447419140-144
GGGGGGG151350.013.748051140-144
CCGTATC6450.013.704117135-139
CGTATCA6900.013.367343135-139
GCCGTAT6850.011.863847130-134
GCGGGGG3601.7834465E-411.585565140-144
TGGGGGG10400.011.585565140-144
GTCGCCG6855.966285E-1011.500998140-144
GGTCGCC7109.094947E-1211.096034140-144
TCGCCGT6551.10958354E-1010.24945130-134
GGGGCGG3100.0031630739.917706135-139
CGCCGTA6552.8630893E-99.710006130-134
AGGGGGG8703.5543053E-99.588053140-144
GGGGGTG9752.6011548E-109.5061035140-144
GTGGTCG7652.1827873E-119.3627825125-129
TGGTCGC7351.0186341E-109.301985125-129
GGGGGGT7506.9285306E-99.268452140-144
AGCTACT6402.727507E-59.1260514
Produced by FastQC (version 0.11.5)