FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549977
Sequences flagged as poor quality0
Sequence length49-150
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAACGGG650.00396732131.636497140-144
GGGGCCG1150.00893743326.788912140-144
GGGCCGG1250.003814067520.563723140-144
CGCCGTA2952.3646862E-1120.417751135-139
TCGCCGT2951.02591E-817.500929135-139
CCGTATC2801.0789336E-716.90194135-139
CGTATCA3351.0934855E-716.880669140-144
GTATCAT4707.8216544E-1116.407227140-144
CGGGGGG3501.8007631E-716.157213140-144
GCCGTAT2902.8801842E-615.954612140-144
GTGGTCG4052.910383E-1115.515435130-134
GGGGGGC4106.589107E-815.046626140-144
GGTCGCC3451.1499305E-613.717517135-139
GGGGGCG2650.001279576413.579817140-144
TGGTCGC3502.5638838E-713.521552135-139
GTCGCCG3251.6392241E-613.29255130-134
GGGGGGG112800.012.670024140-144
GGGGCGG2754.519818E-412.515817135-139
CTCCAAG3902.4780054E-512.0418261
TCTCGGT3902.1761116E-711.962993125-129
Produced by FastQC (version 0.11.5)