FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1005161
Sequences flagged as poor quality0
Sequence length49-150
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGG1406.769741E-414.775943140-144
CGCGGGG1400.004351780714.6707945140-144
GGGGGGG88300.010.107214140-144
GCCGTCT4451.0757976E-58.001215135-139
CCGTCTT5006.1570427E-67.62973135-139
CGTATGC5152.5460668E-67.475186130-134
GGGCGGG5452.0721956E-56.9997525135-139
GCACTCC10902.96381E-46.76062356
CGTCTTC5258.92798E-46.7547174140-144
TATGCCG4855.2732544E-46.7024894140-144
ATCTCGT4453.5790072E-46.6580763125-129
TGCCGTC4700.0099387656.2876353140-144
TCGTATG5058.5982657E-46.1938577130-134
GGGGGGC5453.2021425E-46.1807446130-134
CTCCAGC17853.0904648E-66.03462171
CAATAAT14652.7380444E-45.8048151
GCGGGGG5200.0080162445.6830554140-144
GTATGCC7652.3258872E-55.661354130-134
ACTGCAC12150.00730702475.5985413
AGGGGGG6900.00307306115.5677466140-144
Produced by FastQC (version 0.11.5)