FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005329677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005329677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1005161
Sequences flagged as poor quality0
Sequence length49-150
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCGCGGC751.9974275E-423.214579140-144
TCGGGTA850.002036639322.91504130-134
CGCGGGG2158.997365E-414.2306595140-144
AGCGACG1956.898606E-411.904912140-144
CCGTATC4053.853711E-89.840385135-139
CGCCGTA4157.0300484E-79.78928140-144
GTCGCCG4301.1411576E-69.447793140-144
CTCGGTG6457.4578566E-119.447793140-144
TCTCGGT6651.364242E-109.16365140-144
GGTCGCC4451.8188857E-69.129329140-144
CGTATCA4451.6435479E-78.955856135-139
GCCGTAT4258.1319195E-78.876162140-144
AGGGGGG9950.08.165932140-144
GTGGTCG4602.5295358E-68.122329135-139
ATCTCGG7904.7111826E-108.081023140-144
TCGCCGT3904.5328226E-57.8721075130-134
TGGTCGC4251.3162084E-47.5105987140-144
CGGTGGT6358.0193786E-87.4529295135-139
GGGGGGG148400.07.4500957140-144
GGTGGTC8052.0081643E-97.116707135-139
Produced by FastQC (version 0.11.5)